It means that some extension cards propose RAID capabilities (RAID 0, 1, ...). The redundancy is managed by these extension card and the system (or the OS) doesn't know that such redundancies are in place.
In FreeNAS, the redundancy is managed by the OS and therefore the OS has to be able to access the drive directly without any unknown "filter" (in that case a hardware RAID controller for example). That's why hardware RAID is strongly discouraged with FreeNAS.
And when you need to extend the number of SATA ports you can use an extension card but this card needs to allow direct access to the drive (so you might need to flash its firmware to achieve that).