Frankly I'm not even sure why you'd not want ECC enabled. Just have the darn memory controller enable it if ECC RAM is installed. The only time I can think of that you'd want to disable ECC features is if you aren't using ECC RAM (duh!) or your RAM is bad and you don't want ECC crying to you (and you'd deserve what you get for operating under these circumstances anyway). So why not just have it use it if it exists. ;)
And Zedicus, yes that is some of it. But that's not *all* of it. Even if I try to piece together what could be a "great FreeNAS build on AMD" the fact of the matters have been discussed to death. So to summarize:
1. AMD doesn't spend money on open source (and especially FreeBSD) like it used to years ago. Not surprisingly their hardware doesn't work as well as Intel.
2. AMD's R&D budget has consistently shrank for more than 6 years running.
3. AMD laid off 1/2 of their open source developers 2 summers ago.
4. AMD has virtually no documentation on ECC support through their CPUs
5. AMD system are *meant* to be cheaper and *meant* to be lower end and you should be considering this when choosing hardware for a 24x7 server.
6. AMD's server market is rapidly shrinking
Put these together and the risk of going AMD seems pretty bad. Even the mode we have that went AMD has admitted that his on-board NIC went from working to non-working on an update. Buying AMD is like buying into a future that is pretty bleak for your server. Do you really want to put your data on a server that may or may not work with your hardware on an update? What if I told you that no AMD CPU in existence would work with FreeNAS 10 (no, that's not the case.. just hypothesizing)? You'd probably be pretty angry because you worked hard to build your server and such and suddenly you are being screwed over by it. For all we know next quarter AMD is going to announce they are exiting the server market. That would spell disaster for people that rely on AMDs for servers. AMD is in serious financial problems right now and anything is possible.
So which do you do.. recommend hardware that has an unusually high propensity for not working in the past, may or may not work today and may or may not work in the future and is based on a company that is having major financial troubles and their solution is to cut out the *very* departments you are about to rely on or spend a little more money and go with hardware that we know has worked in the past, works in the present, is extremely likely to work in the future and is based on a company that has financial incentive and means to help solve a problem that involves their hardware? The answer seems pretty darn obvious to me. ;)
My Intel system in my basement cost me $700 for motherboard, CPU and 32GB RAM. Thanks to me being smart I also never have to worry about a working NIC and I have massive CPU resources at my disposal because of my E3-1230v2. I could have just as easily gone with a Pentium G2020 and saved myself about $150. That would put a build with 32GB of RAM, dual Intel Gb NIC, IPMI, and processing power for FreeNAS at about $500-550. Kind of hard to say no to that, and almost 2/3 of the price tag is the RAM.. which is the same as what you'd buy with AMD.