I am kind of surprised there have been reports of this and there still seems to be no solution, or even reasonable information on how to debug. Several people have reported that alerts about fan speed have appeared after an upgrade of TrueNAS. I experienced this as well.
Some people seem to have experienced alerts with timestamps in the present suggesting that there is a problem happening now. Others, myself included, observe the behavior where these alerts are from far in the past but after the TrueNAS upgrade they appear again. Unsure if these are two different problems or different symptoms of the same problem, but one key feature appears to be upgrading TrueNAS. Note this appears to happen on Scale (
https://www.truenas.com/community/threads/hundreds-of-fan-fana-deasserted-errors.108408/) as well as Core (this thread) which suggests it is an issue in the TrueNAS middleware and not an issue with a single underlying OS or driver.
In my case, I observed this after upgrading to TrueNAS-13.0-U5; I dismissed all alerts, logged out and back in, and a couple (not all) re-appeared after a while.